MolNFT v1 · #165636 · protein

Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, carbonate, D-alanine-D-alanine, MG2+ and K+

6U1K: “Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, carbonate, D-alanine-D-alanine, MG2+ and…”. X-ray diffraction, 4 ligands (ADP, MG, K). MolNFT v1 #165636 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6U1K
Type: protein
Length: 1,297 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q5SHZ3
Ligands: ADP, MG, K, CO3

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	326	—	Q5SHZ3
B	—	protein	324	—	Q5SHZ3
C	—	protein	325	—	Q5SHZ3
D	—	protein	322	—	Q5SHZ3

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
K · Potassium ion · metal · 4 copies · chains A, B, C, D
CO3 · Carbonate ion · ion · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6U1K · Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, carbonate… · the same entry in another collection · chain D against D, TM-score 1.00
Q5SHZ3 · AlphaFold monomer V2.0 prediction for D-alanine--D-alanine ligase (Q5SHZ3) · a predicted model of the same protein · chain D against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SHZ3
Elsewhere: RCSB PDB 6U1K · PDBe 6U1K · UniProt Q5SHZ3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.