MolNFT v1 · #165515 · protein
Nt part crystal structure of the rymv-encoded viral RNA silencing suppressor P1
6TY0: “Nt part crystal structure of the rymv-encoded viral RNA silencing suppressor P1”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #165515 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TY0
- Type
- protein
- Length
- 193 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P1
- UniProt
- Q709H6
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P1 | protein | 97 | 10% helix, 55% strand | Q709H6 |
| B | P1 | protein | 96 | 14% helix, 55% strand | Q709H6 |
Ligands and binding sites
- ZN · Zinc ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 551 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6TY0 · Nt part crystal structure of the rymv-encoded viral RNA silencing suppressor P1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q709H6
- Elsewhere: RCSB PDB 6TY0 · PDBe 6TY0 · UniProt Q709H6
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