MolNFT v1 · #165452 · protein
Human CD73 (ecto 5'-nucleotidase) in complex with PSB12676 (an aopcp derivative, compound 9 in paper) in the closed state
6TVX: “Human CD73 (ecto 5'-nucleotidase) in complex with PSB12676 (an aopcp derivative, compound 9 in paper) in the…”. X-ray diffraction, 2 ligands (NYW, ZN). MolNFT v1 #165452 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TVX
- Type
- protein
- Length
- 517 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P21589
- Ligands
- NYW, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 517 | — | P21589 |
Ligands and binding sites
- NYW · [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TVX · Human CD73 (ecto 5'-nucleotidase) in complex with PSB12676 (an AOPCP derivative, compound… · the same entry in another collection · chain A against A, TM-score 1.00
- P21589 · AlphaFold monomer V2.0 prediction for 5'-nucleotidase (P21589) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21589
- Elsewhere: RCSB PDB 6TVX · PDBe 6TVX · UniProt P21589
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