MolNFT v1 · #165430 · protein

NMR structure of N-terminal domain from a. argentata tubuliform spidroin (tusp) at pH 5.5

6TV5 · Tubuliform spidroin 1: “NMR structure of N-terminal domain from a. argentata tubuliform spidroin (tusp) at pH 5.5”. Solution nmr, 2 pockets (best druggability 0.65). MolNFT v1 #165430 on GenesisL1: 3D structure, binding sites and…

PDB: 6TV5
Type: protein
Length: 274 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tubuliform spidroin 1
UniProt: A0A2R2YSJ7
Pockets: 2 · best druggability 0.65

Structure

solution nmr · 1 distinct chain · 66% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Tubuliform spidroin 1	protein	137	66% helix, 0% strand	A0A2R2YSJ7

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	108	0.65	0.89	23	empty
2	321	0.59	0.77	35	empty

Interfaces

1 interface between chains.

A–B · 1645 Å² buried · 26 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6TV5 · NMR structure of N-terminal domain from A. argentata tubuliform spidroin (TuSp) at pH 5.5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2R2YSJ7
Elsewhere: RCSB PDB 6TV5 · PDBe 6TV5 · UniProt A0A2R2YSJ7

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