MolNFT v1 · #165324 · protein
Corynebacterium diphtheriae methionine sulfoxide reductase B (msrb) solution structure - reduced form
6TR8 · Peptide-methionine (R)-S-oxide reductase: “Corynebacterium diphtheriae methionine sulfoxide reductase B (msrb) solution structure - reduced form”. Solution nmr, 1 ligand (ZN), 2 pockets (best druggability 0.49). MolNFT v1 #165324 on…
- PDB
- 6TR8
- Type
- protein
- Length
- 136 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide-methionine (R)-S-oxide reductase
- EC
- 1.8.4.12
- UniProt
- A0A0D6GDN9
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.49
Structure
solution nmr · 1 distinct chain · 13% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide-methionine (R)-S-oxide reductase (EC 1.8.4.12) | protein | 136 | 13% helix, 24% strand | A0A0D6GDN9 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.49 | 0.81 | 24 | empty |
| 2 | 76 | 0.42 | 0.80 | 14 | empty |
Compared structures
- 6TR8 · Corynebacterium diphtheriae methionine sulfoxide reductase B (MsrB) solution structure… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6GDN9
- Elsewhere: RCSB PDB 6TR8 · PDBe 6TR8 · UniProt A0A0D6GDN9
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