MolNFT v1 · #165293 · protein

D00-D0 domain of intimin

6TQD: “D00-D0 domain of intimin”. X-ray diffraction, 3 ligands (NA, BR, CL). MolNFT v1 #165293 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TQD
Type: protein
Length: 1,227 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P19809
Ligands: NA, BR, CL

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	204	—	P19809
B, D	—	protein	206	—	P19809
E	—	protein	202	—	P19809
F	—	protein	205	—	P19809

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B
BR · Bromide ion · ion · 9 copies · chains A, B, C, D, E, F
CL · Chloride ion · ion · 6 copies · chains A, B, C, D
PG4 · Tetraethylene glycol · additive · chains D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6TQD · D00-D0 domain of Intimin · the same entry in another collection · chain F against F, TM-score 1.00
P19809 · AlphaFold monomer V2.0 prediction for intimin (P19809) · a predicted model of the same protein · chain F against A, TM-score 0.53

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19809
Elsewhere: RCSB PDB 6TQD · PDBe 6TQD · UniProt P19809

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