MolNFT v1 · #165274 · protein

Conformation of CD1 nitrite reductase nirs without bound heme D1

6TPO: “Conformation of CD1 nitrite reductase nirs without bound heme D1”. X-ray diffraction, 1 ligand (HEC). MolNFT v1 #165274 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TPO
Type: protein
Length: 523 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P24474
Ligands: HEC

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	523	—	P24474

Ligands and binding sites

HEC · Heme C · ligand · chains A
1PE · Pentaethylene glycol · additive · chains A
BU3 · (R,R)-2,3-butanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6TPO · Conformation of cd1 nitrite reductase NirS without bound heme d1 · the same entry in another collection · chain A against A, TM-score 1.00
P24474 · AlphaFold monomer V2.0 prediction for nitrite reductase (P24474) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24474
Elsewhere: RCSB PDB 6TPO · PDBe 6TPO · UniProt P24474

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