MolNFT v1 · #165258 · protein
Substrate protein interactions in the limbus region of the catalytic site of candida antarctica lipase B
6TP8: “Substrate protein interactions in the limbus region of the catalytic site of candida antarctica lipase B”. X-ray diffraction, 3 ligands (DEP, NTK, NAG). MolNFT v1 #165258 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TP8
- Type
- protein
- Length
- 951 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P41365
- Ligands
- DEP, NTK, NAG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 317 | — | P41365 |
Ligands and binding sites
- DEP · Diethyl phosphonate · ligand · 3 copies · chains A, B, C
- NTK · 2,3-di(butanoyloxy)propyl butanoate · ligand · 2 copies · chains A, B, C
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TP8 · Substrate protein interactions in the limbus region of the catalytic site of Candida… · the same entry in another collection · chain A against A, TM-score 1.00
- P41365 · AlphaFold monomer V2.0 prediction for lipase B (P41365) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41365
- Elsewhere: RCSB PDB 6TP8 · PDBe 6TP8 · UniProt P41365
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