MolNFT v1 · #165237 · protein
Crystal structure of human BCL6 btb domain in complex with compound 23D
6TOK: “Crystal structure of human BCL6 btb domain in complex with compound 23D”. X-ray diffraction, 1 ligand (NQT). MolNFT v1 #165237 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TOK
- Type
- protein
- Length
- 130 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P41182
- Ligands
- NQT
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 125 | — | P41182 |
| B | — | protein | 5 | — | — |
Ligands and binding sites
- NQT · 5-[[5-chloranyl-2-(3,5-dimethylpyrazol-1-yl)pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl) benzimidazol-2-one · ligand · chains A
- EDO · 1,2-ethanediol · additive · 12 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TOK · Crystal structure of human BCL6 BTB domain in complex with compound 23d · the same entry in another collection · chain A against A, TM-score 1.00
- P41182 · AlphaFold monomer V2.0 prediction for B-cell lymphoma 6 protein (P41182) · a predicted model of the same protein · chain A against A, TM-score 0.32
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41182
- Elsewhere: RCSB PDB 6TOK · PDBe 6TOK · UniProt P41182
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