MolNFT v1 · #165214 · protein
Crystal structure of the scfv-5E5 in complex with a tn glycopeptide
6TNP: “Crystal structure of the scfv-5E5 in complex with a tn glycopeptide”. X-ray diffraction, 1 ligand (NO8). MolNFT v1 #165214 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TNP
- Type
- protein
- Length
- 1,343 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NO8
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, J, L | — | protein | 112 | — | — |
| B, F, H | — | protein | 115 | — | — |
| D | — | protein | 116 | — | — |
| I | — | protein | 109 | — | — |
| K | — | protein | 101 | — | — |
Ligands and binding sites
- NO8 · (2~{S})-~{N}-[2-[[(2~{S})-1-[[(2~{S},3~{R})-3-[(2~{S}, 3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-1-[[(2~{S})-1-[(2~{S})-2-aminocarbonylpyrrolidin-1-yl]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-oxidanylidene-ethyl]-1-[(2~{S})-2-azanylpropanoyl]pyrrolidine-2-carboxamide · ligand · 4 copies · chains A, B, L, E, F, H, G, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TNP · Crystal structure of the ScFv-5E5 in complex with a Tn glycopeptide · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6TNP · PDBe 6TNP
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