MolNFT v1 · #165200 · RNA
Crystal structure of yeast phenylalanine T-RNA. I.CRYSTALLOGRAPHIC refinement
6TNA · Trnaphe: “Crystal structure of yeast phenylalanine T-RNA. I.CRYSTALLOGRAPHIC refinement”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.62). MolNFT v1 #165200 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6TNA
- Type
- RNA
- Length
- 76 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trnaphe
- Ligands
- MG
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trnaphe | rna | 76 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 648 | 0.62 | 0.74 | 32 | empty |
| 2 | 357 | 0.55 | 0.76 | 23 | MG |
Modifications
Observed in the structure: 14 modified (nucleotide modification).
Compared structures
- 6TNA · Crystal structure of yeast phenylalanine T-RNA. I.CRYSTALLOGRAPHIC refinement · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6TNA · PDBe 6TNA
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