MolNFT v1 · #165104 · protein
Crystal structure of T7 bacteriophage portal protein, 13MER, closed valve - P212121
6TJP: “Crystal structure of T7 bacteriophage portal protein, 13MER, closed valve - P212121”. X-ray diffraction, 20 pockets (best druggability 0.87). MolNFT v1 #165104 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TJP
- Type
- protein
- Length
- 6,149 residues
- Chains
- 13
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Portal protein
- UniProt
- P03728
- Pockets
- 20 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M | Portal protein | protein | 473 | 48% helix, 15% strand | P03728 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1016 | 0.87 | 0.89 | 100 | empty |
| 2 | 979 | 0.87 | 0.89 | 98 | empty |
| 3 | 919 | 0.87 | 0.88 | 97 | empty |
| 4 | 932 | 0.86 | 0.88 | 95 | empty |
| 5 | 1168 | 0.86 | 0.87 | 100 | empty |
Interfaces
26 interfaces between chains.
- E–F · 5340 Ų buried · 50 hydrogen bonds · protein-protein
- F–G · 5330 Ų buried · 50 hydrogen bonds · protein-protein
- G–H · 5329 Ų buried · 51 hydrogen bonds · protein-protein
- A–M · 5326 Ų buried · 44 hydrogen bonds · protein-protein
- L–M · 5286 Ų buried · 42 hydrogen bonds · protein-protein
Compared structures
- 6TJP · Crystal structure of T7 bacteriophage portal protein, 13mer, closed valve - P212121 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03728
- Elsewhere: RCSB PDB 6TJP · PDBe 6TJP · UniProt P03728
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