MolNFT v1 · #165010 · protein

Scfv-1SM3 in complex with glycopeptide containing an SP2-imino sugar

6TGG: “Scfv-1SM3 in complex with glycopeptide containing an SP2-imino sugar”. X-ray diffraction, 1 ligand (N8W). MolNFT v1 #165010 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TGG
Type: protein
Length: 231 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P15941
Ligands: N8W

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
H	—	protein	225	—	—
P	—	protein	6	—	P15941

Ligands and binding sites

N8W · ~{N}-[(6~{S},7~{R},8~{S},8~{A}~{R})-7,8-bis(oxidanyl)-3-oxidanylidene-1,5,6,7,8,8~{A}-hexahydro-[1, 3]oxazolo[3,4-a]pyridin-6-yl]ethanamide · ligand · chains H, P
EDO · 1,2-ethanediol · additive · 4 copies · chains H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6TGG · scFv-1SM3 in complex with glycopeptide containing an sp2-imino sugar · the same entry in another collection · chain H against H, TM-score 1.00
P15941 · AlphaFold monomer V2.0 prediction for mucin-1 (P15941) · a predicted model of the same protein · chain P against A, TM-score 0.41

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15941
Elsewhere: RCSB PDB 6TGG · PDBe 6TGG · UniProt P15941

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