Cryo-EM structure of NADH reduced form of NAD+-dependent formate dehydrogenase from rhodobacter capsulatus

Structure

electron microscopy · 4 distinct chains.

Ligands and binding sites

• SF4 · Iron/sulfur cluster · ligand · 10 copies · chains A, B, E, F
• MGD · 2-amino-5,6-dimercapto-7-methyl-3,7,8A,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide · ligand · 4 copies · chains A, E
• FES · Fe2/s2 (inorganic) cluster · ligand · 4 copies · chains A, G, E, C
• FMN · Flavin mononucleotide · ligand · 2 copies · chains B, F
• NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · 2 copies · chains A, B, E, F
• 6MO · Molybdenum(vi) ion · metal · 2 copies · chains A, E
• H2S · Hydrosulfuric acid · ion · 2 copies · chains A, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 6TG9 · Cryo-EM Structure of NADH reduced form of NAD+-dependent Formate Dehydrogenase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt A0A0E2PAE3
• Every structure of UniProt A0A0E2P9P2
• Every structure of UniProt A0A0E2PAI9
• Every structure of UniProt A0A0E2P9Z0
• Elsewhere: RCSB PDB 6TG9 · PDBe 6TG9 · UniProt A0A0E2PAE3 · UniProt A0A0E2P9P2 · UniProt A0A0E2PAI9 · UniProt A0A0E2P9Z0