MolNFT v1 · #164976 · RNA
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with adenosine 3-phosphate 5-phosphosulfate (apps)
6TFG · Chains: a: “Crystal structure of the ADP-binding domain of the NAD+ riboswitch with adenosine 3-phosphate…”. X-ray diffraction, 3 ligands (PPS, MG, NA), 2 pockets (best druggability 0.54). MolNFT v1 #164976 on GenesisL1: 3D…
- PDB
- 6TFG
- Type
- RNA
- Length
- 52 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chains: a
- Ligands
- PPS, MG, NA
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chains: a | rna | 52 | — | — |
Ligands and binding sites
- PPS · 3'-phosphate-adenosine-5'-phosphate sulfate · ligand · chains A
- MG · Magnesium ion · metal · 6 copies · chains A
- NA · Sodium ion · metal · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 469 | 0.54 | 0.72 | 25 | MG, NA |
| 2 | 57 | 0.23 | 0.71 | 10 | MG |
Compared structures
- 6TFG · Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6TFG · PDBe 6TFG
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