MolNFT v1 · #164943 · protein
Baseplate of native gta particle computed with C3 symmetry
6TEH · Putative gene transfer agent protein: “Baseplate of native gta particle computed with C3 symmetry”. Electron microscopy, 1 ligand (SF4), 15 pockets (best druggability 0.80). MolNFT v1 #164943 on GenesisL1: 3D structure, binding…
- PDB
- 6TEH
- Type
- protein
- Length
- 999 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative gene transfer agent protein
- UniProt
- A0A9U0, A0A9S9, A0A9T9
- Ligands
- SF4
- Pockets
- 15 · best druggability 0.80
Structure
electron microscopy · 3 distinct chains · 13% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Putative gene transfer agent protein | protein | 292 | 8% helix, 20% strand | A0A9U0 |
| D | Putative gene transfer agent protein | protein | 439 | 17% helix, 18% strand | A0A9S9 |
| B, A | Putative gene transfer agent protein | protein | 134 | 11% helix, 19% strand | A0A9T9 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 325 | 0.80 | 0.90 | 54 | empty |
| 2 | 75 | 0.73 | 0.96 | 16 | SF4 |
| 3 | 71 | 0.72 | 0.97 | 27 | empty |
| 4 | 253 | 0.66 | 0.83 | 33 | empty |
| 5 | 220 | 0.64 | 0.83 | 33 | empty |
Interfaces
5 interfaces between chains.
- C–D · 3457 Ų buried · 34 hydrogen bonds · protein-protein
- B–A · 1341 Ų buried · 20 hydrogen bonds · protein-protein
- C–B · 454 Ų buried · 7 hydrogen bonds · protein-protein
- C–A · 427 Ų buried · 13 hydrogen bonds · protein-protein
- D–A · 352 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6TEH · Baseplate of native GTA particle computed with C3 symmetry · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A9U0
- Every structure of UniProt A0A9S9
- Every structure of UniProt A0A9T9
- Elsewhere: RCSB PDB 6TEH · PDBe 6TEH · UniProt A0A9U0 · UniProt A0A9S9 · UniProt A0A9T9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.