MolNFT v1 · #164937 · protein

Neck of native gta particle computed with C12 symmetry

6TE8 · Adaptor protein RCC01688: “Neck of native gta particle computed with C12 symmetry”. Electron microscopy, 7 pockets (best druggability 0.63). MolNFT v1 #164937 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6TE8
Type: protein
Length: 542 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adaptor protein RCC01688; Phage portal protein, HK97 family
UniProt: D5ATZ4, Q9RNH1
Pockets: 7 · best druggability 0.63

Structure

electron microscopy · 2 distinct chains · 38% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Adaptor protein RCC01688	protein	182	26% helix, 16% strand	D5ATZ4
A	Phage portal protein, HK97 family	protein	360	44% helix, 11% strand	Q9RNH1

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	230	0.63	0.82	26	empty
2	235	0.54	0.77	35	empty
3	245	0.51	0.75	29	empty
4	109	0.44	0.77	16	empty
5	108	0.39	0.75	17	empty

Interfaces

1 interface between chains.

B–A · 737 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

6TE8 · Neck of native GTA particle computed with C12 symmetry · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D5ATZ4
Every structure of UniProt Q9RNH1
Elsewhere: RCSB PDB 6TE8 · PDBe 6TE8 · UniProt D5ATZ4 · UniProt Q9RNH1

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