MolNFT v1 · #164671 · protein
Hydroxylamine oxidoreductase from brocadia fulgida
6T5E · Hydroxylamine oxidoreductase-like protein: “Hydroxylamine oxidoreductase from brocadia fulgida”. X-ray diffraction, 2 ligands (HEC, SO4), 4 pockets (best druggability 0.86). MolNFT v1 #164671 on GenesisL1: 3D structure, binding…
- PDB
- 6T5E
- Type
- protein
- Length
- 439 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydroxylamine oxidoreductase-like protein
- UniProt
- A0A0M2UZI7
- Ligands
- HEC, SO4
- Pockets
- 4 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydroxylamine oxidoreductase-like protein | protein | 439 | 47% helix, 2% strand | A0A0M2UZI7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1136 | 0.86 | 0.87 | 124 | HEC |
| 2 | 95 | 0.50 | 0.82 | 17 | empty |
| 3 | 78 | 0.33 | 0.74 | 17 | empty |
| 4 | 52 | 0.30 | 0.75 | 18 | empty |
Modifications
Observed in the structure: 16 cofactor (heme c attachment).
Compared structures
- 6T5E · Hydroxylamine Oxidoreductase from Brocadia fulgida · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M2UZI7
- Elsewhere: RCSB PDB 6T5E · PDBe 6T5E · UniProt A0A0M2UZI7
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