MolNFT v1 · #164429 · protein

Crystal structure of spectinomycin adenyltransferase AAD(9) from enterococcus faecialis

6SXJ · Streptomycin 3''-adenylyltransferase: “Crystal structure of spectinomycin adenyltransferase AAD(9) from enterococcus faecialis”. X-ray diffraction, 1 pocket (best druggability 0.72). MolNFT v1 #164429 on GenesisL1: 3D structure…

PDB: 6SXJ
Type: protein
Length: 250 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Streptomycin 3''-adenylyltransferase
EC: 2.7.7.47
UniProt: Q07448
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Streptomycin 3''-adenylyltransferase (EC 2.7.7.47)	protein	250	53% helix, 13% strand	Q07448

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	684	0.72	0.79	54	empty

Compared structures

6SXJ · Crystal structure of spectinomycin adenyltransferase AAD(9) from Enterococcus faecialis · the same entry in another collection · chain A against A, TM-score 1.00
Q07448 · AlphaFold monomer V2.0 prediction for spectinomycin 9-adenylyltransferase (Q07448) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q07448
Elsewhere: RCSB PDB 6SXJ · PDBe 6SXJ · UniProt Q07448

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