MolNFT v1 · #164397 · protein + RNA
IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of AIF1 in P. abyssi
6SWE: “IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of AIF1 in…”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #164397 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SWE
- Type
- protein + RNA
- Length
- 2,009 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9V109, Q9V195, Q9V0V6, Q9V1A0, P62012, Q9V0G0, Q9V1T9, Q9V0G8, P61029, P61238, Q9V1U1, P62008, Q9V138
- Ligands
- MG, ZN
Structure
electron microscopy · 15 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 2 | — | rna | 468 | — | — |
| H | — | protein | 213 | — | Q9V109 |
| K | — | protein | 134 | — | Q9V195 |
| L | — | protein | 101 | — | Q9V0V6 |
| O | — | protein | 143 | — | Q9V1A0 |
| P | — | protein | 55 | — | P62012 |
| S | — | protein | 66 | — | Q9V0G0 |
| T | — | protein | 130 | — | Q9V1T9 |
| U | — | protein | 149 | — | Q9V0G8 |
| X | — | protein | 67 | — | P61029 |
| Y | — | protein | 50 | — | P61238 |
| Z | — | protein | 197 | — | Q9V1U1 |
| 3 | — | protein | 123 | — | P62008 |
| 4 | — | rna | 18 | — | — |
| 6 | — | protein | 95 | — | Q9V138 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6SWE · IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex… · the same entry in another collection · chain Y against Y, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V109
- Every structure of UniProt Q9V195
- Every structure of UniProt Q9V0V6
- Every structure of UniProt Q9V1A0
- Every structure of UniProt P62012
- Every structure of UniProt Q9V0G0
- Every structure of UniProt Q9V1T9
- Every structure of UniProt Q9V0G8
- Every structure of UniProt P61029
- Every structure of UniProt P61238
- Every structure of UniProt Q9V1U1
- Every structure of UniProt P62008
- Every structure of UniProt Q9V138
- Elsewhere: RCSB PDB 6SWE · PDBe 6SWE · UniProt Q9V109 · UniProt Q9V195 · UniProt Q9V0V6 · UniProt Q9V1A0 · UniProt P62012 · UniProt Q9V0G0 · UniProt Q9V1T9 · UniProt Q9V0G8 · UniProt P61029 · UniProt P61238 · UniProt Q9V1U1 · UniProt P62008 · UniProt Q9V138
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