MolNFT v1 · #164325 · protein
PH2119 endolysin from thermus scotoductus MAT2119 bacteriophage PH2119
6SU5 · Lysozyme: “PH2119 endolysin from thermus scotoductus MAT2119 bacteriophage PH2119”. X-ray diffraction, 2 ligands (ZN, PO4), 1 pocket (best druggability 0.34). MolNFT v1 #164325 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6SU5
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- UniProt
- W0FBY3
- Ligands
- ZN, PO4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme | protein | 154 | 29% helix, 17% strand | W0FBY3 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.34 | 0.76 | 18 | PO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6SU5 · Ph2119 endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W0FBY3
- Elsewhere: RCSB PDB 6SU5 · PDBe 6SU5 · UniProt W0FBY3
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