MolNFT v1 · #164312 · protein

Human myelin protein P2 mutant R30Q

6STS · Myelin P2 protein: “Human myelin protein P2 mutant R30Q”. X-ray diffraction, 2 ligands (PLM, SO4), 3 pockets (best druggability 0.85). MolNFT v1 #164312 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6STS
Type: protein
Length: 266 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myelin P2 protein
UniProt: P02689
Ligands: PLM, SO4
Pockets: 3 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Myelin P2 protein	protein	133	14% helix, 56% strand	P02689

Ligands and binding sites

PLM · Palmitic acid · ligand · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	351	0.85	0.94	37	PLM
2	348	0.83	0.93	34	PLM
3	193	0.55	0.79	26	empty

Interfaces

1 interface between chains.

A–B · 548 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

6STS · Human myelin protein P2 mutant R30Q · the same entry in another collection · chain A against A, TM-score 1.00
P02689 · AlphaFold monomer V2.0 prediction for myelin P2 protein (P02689) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02689
Elsewhere: RCSB PDB 6STS · PDBe 6STS · UniProt P02689

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