MolNFT v1 · #164295 · protein

Crystal structure of the strawberry pathogenesis-related 10 (pr-10) fra a 1.02 protein, Q64W mutant

6STB · Major strawberry allergen fra a 1-2: “Crystal structure of the strawberry pathogenesis-related 10 (pr-10) fra a 1.02 protein, Q64W mutant”. X-ray diffraction, 3 pockets (best druggability 0.79). MolNFT v1 #164295 on GenesisL1: 3D…

PDB: 6STB
Type: protein
Length: 320 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major strawberry allergen fra a 1-2
UniProt: D0E0C6
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Major strawberry allergen fra a 1-2	protein	162	25% helix, 41% strand	D0E0C6
B	Major strawberry allergen fra a 1-2	protein	158	27% helix, 42% strand	D0E0C6

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	691	0.79	0.82	53	empty
2	673	0.77	0.81	61	empty
3	262	0.49	0.74	25	empty

Interfaces

1 interface between chains.

A–B · 432 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6STB · Crystal structure of the strawberry pathogenesis-related 10 (PR-10) Fra a 1.02 protein… · the same entry in another collection · chain A against A, TM-score 1.00
D0E0C6 · AlphaFold monomer V2.0 prediction for major strawberry allergen fra a 1-2 (D0E0C6) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0E0C6
Elsewhere: RCSB PDB 6STB · PDBe 6STB · UniProt D0E0C6

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