MolNFT v1 · #164248 · protein
Endolysine N-acetylmuramoyl-L-alanine amidase lyscs from clostridium intestinale urnw
6SRT: “Endolysine N-acetylmuramoyl-L-alanine amidase lyscs from clostridium intestinale urnw”. X-ray diffraction, 2 ligands (ZN, PO4), 1 pocket (best druggability 0.39). MolNFT v1 #164248 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6SRT
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-acetylmuramoyl-L-alanine amidase
- UniProt
- U2NM08
- Ligands
- ZN, PO4
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-acetylmuramoyl-L-alanine amidase | protein | 152 | 27% helix, 16% strand | U2NM08 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.39 | 0.75 | 21 | GOL, PO4 |
Compared structures
- 6SRT · Endolysine N-acetylmuramoyl-L-alanine amidase LysCS from Clostridium intestinale URNW · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U2NM08
- Elsewhere: RCSB PDB 6SRT · PDBe 6SRT · UniProt U2NM08
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