MolNFT v1 · #16421 · DNA
Solution structure of DNA quadruplex gcggtggat
1NYD · 5'-D(*GP*CP*GP*GP*TP*GP*GP*AP*T)-3': “Solution structure of DNA quadruplex gcggtggat”. Solution nmr. MolNFT v1 #16421 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NYD
- Type
- DNA
- Length
- 36 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*CP*GP*GP*TP*GP*GP*AP*T)-3'
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | 5'-D(*GP*CP*GP*GP*TP*GP*GP*AP*T)-3' | dna | 9 | — | — |
Interfaces
6 interfaces between chains.
- A–B · 420 Ų buried · 20 hydrogen bonds · nucleic-nucleic
- C–D · 417 Ų buried · 19 hydrogen bonds · nucleic-nucleic
- B–D · 320 Ų buried · 13 hydrogen bonds · nucleic-nucleic
- A–C · 320 Ų buried · 13 hydrogen bonds · nucleic-nucleic
- A–D · 148 Ų buried · 8 hydrogen bonds · nucleic-nucleic
Compared structures
- 1NYD · Solution structure of DNA quadruplex GCGGTGGAT · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1NYD · PDBe 1NYD
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