MolNFT v1 · #16415 · protein
Cowpea mosaic virus (cpmv)
1NY7 · Cowpea mosaic virus, small (S) subunit: “Cowpea mosaic virus (cpmv)”. X-ray diffraction, 6 pockets (best druggability 0.56). MolNFT v1 #16415 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NY7
- Type
- protein
- Length
- 558 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cowpea mosaic virus, small (S) subunit; Cowpea mosaic virus, large (L) subunit
- UniProt
- P03599
- Pockets
- 6 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | Cowpea mosaic virus, small (S) subunit | protein | 189 | 6% helix, 46% strand | P03599 |
| 2 | Cowpea mosaic virus, large (L) subunit | protein | 369 | 11% helix, 41% strand | P03599 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.56 | 0.82 | 19 | empty |
| 2 | 83 | 0.50 | 0.83 | 23 | empty |
| 3 | 172 | 0.50 | 0.77 | 31 | empty |
| 4 | 82 | 0.44 | 0.80 | 21 | empty |
| 5 | 65 | 0.31 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- 1–2 · 1790 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 1NY7 · Cowpea mosaic virus (cpmv) · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03599
- Elsewhere: RCSB PDB 1NY7 · PDBe 1NY7 · UniProt P03599
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