MolNFT v1 · #164109 · protein
Crystal structure of the collagen VI ALPHA3 N2 domain
6SNK · Collagen alpha-3(VI) chain: “Crystal structure of the collagen VI ALPHA3 N2 domain”. X-ray diffraction, 1 pocket (best druggability 0.50). MolNFT v1 #164109 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SNK
- Type
- protein
- Length
- 375 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen alpha-3(VI) chain
- UniProt
- P12111
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Collagen alpha-3(VI) chain | protein | 188 | 43% helix, 24% strand | P12111 |
| B | Collagen alpha-3(VI) chain | protein | 187 | 44% helix, 25% strand | P12111 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.50 | 0.80 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 529 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6SNK · Crystal structure of the Collagen VI alpha3 N2 domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12111
- Elsewhere: RCSB PDB 6SNK · PDBe 6SNK · UniProt P12111
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