MolNFT v1 · #164080 · protein
ANTDE:ANTF (holo): type II pks acyl-carrier protein in complex with its ketosynthase bound to the hexaketide
6SMP: “ANTDE:ANTF (holo): type II pks acyl-carrier protein in complex with its ketosynthase bound to the hexaketide”. X-ray diffraction, 1 ligand (LLE). MolNFT v1 #164080 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SMP
- Type
- protein
- Length
- 3,338 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A2S8QL96, Q7MZT3, Q7MZT4
- Ligands
- LLE
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, G, J | — | protein | 72 | — | A0A2S8QL96 |
| B, E | — | protein | 417 | — | Q7MZT3 |
| C, L | — | protein | 349 | — | Q7MZT4 |
| F | — | protein | 348 | — | Q7MZT4 |
| H | — | protein | 413 | — | Q7MZT3 |
| I | — | protein | 348 | — | Q7MZT4 |
| K | — | protein | 409 | — | Q7MZT3 |
Ligands and binding sites
- LLE · (2~{R})-3,3-dimethyl-2-oxidanyl-~{N}-[3-oxidanylidene-3-[2-[(1~{R},4~{Z},6~{Z},8~{Z})-1,5,7,9-tetrakis(oxidanyl)-3,11-bis(oxidanylidene)dodeca-4,6, 8-trienyl]sulfanylethylamino]propyl]-4-[tris(oxidanyl)-$L^{5}-phosphanyl]oxy-butanamide · ligand · 4 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6SMP · AntDE:AntF (holo): type II PKS acyl-carrier protein in complex with its ketosynthase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S8QL96
- Every structure of UniProt Q7MZT3
- Every structure of UniProt Q7MZT4
- Elsewhere: RCSB PDB 6SMP · PDBe 6SMP · UniProt A0A2S8QL96 · UniProt Q7MZT3 · UniProt Q7MZT4
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