MolNFT v1 · #164059 · protein
Venus 66 P-azido-L-phenylalanin (azf) variant, dark grown
6SM0 · Green fluorescent protein: “Venus 66 P-azido-L-phenylalanin (azf) variant, dark grown”. X-ray diffraction, 4 ligands (LKE, ZN, OXY), 2 pockets (best druggability 0.70). MolNFT v1 #164059 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6SM0
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- P42212
- Ligands
- LKE, ZN, OXY, SO4
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 226 | 12% helix, 52% strand | P42212 |
Ligands and binding sites
- LKE · 2-[(4~{Z})-2-(aminomethyl)-4-[(4-azidophenyl) methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid · ligand · chains A
- ZN · Zinc ion · metal · chains A
- OXY · Oxygen molecule · ion · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.70 | 0.97 | 20 | LKE, OXY |
| 2 | 53 | 0.36 | 0.79 | 11 | empty |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 6SM0 · PDBe 6SM0 · UniProt P42212
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