MolNFT v1 · #16399 · DNA + RNA
HIV-1 polypurine hybrid, R(GAGGACUG):D(CAGTCCTC), NMR, 18 structures
1NXR · DNA (5'-D(*CP*AP*GP*TP*CP*CP*TP*C)-3'): “HIV-1 polypurine hybrid, R(GAGGACUG):D(CAGTCCTC), NMR, 18 structures”. Solution nmr. MolNFT v1 #16399 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NXR
- Type
- DNA + RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*AP*GP*TP*CP*CP*TP*C)-3'); RNA (5'-R(*GP*AP*GP*GP*AP*CP*UP*G)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*AP*GP*TP*CP*CP*TP*C)-3') | dna | 8 | — | — |
| B | RNA (5'-R(*GP*AP*GP*GP*AP*CP*UP*G)-3') | rna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 390 Ų buried · 51 hydrogen bonds · nucleic-nucleic
Compared structures
- 1NXR · HIV-1 polypurine hybrid, R(GAGGACUG):D(CAGTCCTC), NMR, 18 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1NXR · PDBe 1NXR
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