MolNFT v1 · #163960 · protein
Paak family AMP-ligase with AMP and substrate
6SIY: “Paak family AMP-ligase with AMP and substrate”. X-ray diffraction, 4 ligands (3HA, AMP, MG). MolNFT v1 #163960 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SIY
- Type
- protein
- Length
- 869 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A022MRT4
- Ligands
- 3HA, AMP, MG, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 433 | — | A0A022MRT4 |
| B | — | protein | 436 | — | A0A022MRT4 |
Ligands and binding sites
- 3HA · 3-hydroxyanthranilic acid · ligand · 4 copies · chains A, B
- AMP · Adenosine monophosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 3 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6SIY · PaaK family AMP-ligase with AMP and substrate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A022MRT4
- Elsewhere: RCSB PDB 6SIY · PDBe 6SIY · UniProt A0A022MRT4
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