MolNFT v1 · #163943 · protein
Structure of bacterial flagellar capping protein flid
6SIH · Flagellar hook-associated protein 2: “Structure of bacterial flagellar capping protein flid”. Electron microscopy, 20 pockets (best druggability 0.72). MolNFT v1 #163943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SIH
- Type
- protein
- Length
- 4,880 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar hook-associated protein 2
- UniProt
- A0A3I4YJR7
- Pockets
- 20 · best druggability 0.72
Structure
electron microscopy · 1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, H, B, F, C, G, D, I, E, J | Flagellar hook-associated protein 2 | protein | 488 | 42% helix, 19% strand | A0A3I4YJR7 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.72 | 0.97 | 19 | empty |
| 2 | 68 | 0.72 | 0.96 | 19 | empty |
| 3 | 68 | 0.71 | 0.96 | 19 | empty |
| 4 | 71 | 0.71 | 0.95 | 19 | empty |
| 5 | 66 | 0.70 | 0.95 | 18 | empty |
Interfaces
40 interfaces between chains.
- A–G · 1169 Ų buried · 2 hydrogen bonds · protein-protein
- C–I · 1162 Ų buried · 2 hydrogen bonds · protein-protein
- F–D · 1155 Ų buried · 2 hydrogen bonds · protein-protein
- B–J · 1143 Ų buried · 2 hydrogen bonds · protein-protein
- H–E · 1143 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6SIH · Structure of bacterial flagellar capping protein FliD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3I4YJR7
- Elsewhere: RCSB PDB 6SIH · PDBe 6SIH · UniProt A0A3I4YJR7
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