MolNFT v1 · #163942 · protein
Epidermicin antimicrobial protein from staphylococcus epidermidis
6SIG · Epidermicin locus structural protein: “Epidermicin antimicrobial protein from staphylococcus epidermidis”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.33). MolNFT v1 #163942 on GenesisL1: 3D structure, binding…
- PDB
- 6SIG
- Type
- protein
- Length
- 201 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Epidermicin locus structural protein
- UniProt
- H9BG66
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 82% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Epidermicin locus structural protein | protein | 50 | 82% helix, 2% strand | H9BG66 |
| B | Epidermicin locus structural protein | protein | 51 | 82% helix, 0% strand | H9BG66 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.33 | 0.72 | 17 | empty |
Interfaces
3 interfaces between chains.
- B–C · 379 Ų buried · 6 hydrogen bonds · protein-protein
- A–D · 182 Ų buried · 7 hydrogen bonds · protein-protein
- B–D · 138 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6SIG · Epidermicin antimicrobial protein from Staphylococcus epidermidis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H9BG66
- Elsewhere: RCSB PDB 6SIG · PDBe 6SIG · UniProt H9BG66
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