MolNFT v1 · #163921 · protein
Borrelia burgdorferi bmpd nucleoside binding protein bound to adenosine
6SHU · Basic membrane protein D: “Borrelia burgdorferi bmpd nucleoside binding protein bound to adenosine”. X-ray diffraction, 3 ligands (ADN, NA, CL), 2 pockets (best druggability 0.71). MolNFT v1 #163921 on GenesisL1: 3D structure…
- PDB
- 6SHU
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Basic membrane protein D
- UniProt
- E4S1L1
- Ligands
- ADN, NA, CL
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Basic membrane protein D | protein | 316 | 47% helix, 22% strand | E4S1L1 |
Ligands and binding sites
- ADN · Adenosine · ligand · chains A
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.71 | 0.93 | 24 | ADN |
| 2 | 149 | 0.47 | 0.77 | 22 | empty |
Compared structures
- 6SHU · Borrelia burgdorferi BmpD nucleoside binding protein bound to adenosine · the same entry in another collection · chain A against A, TM-score 1.00
- E4S1L1 · AlphaFold monomer V2.0 prediction for basic membrane protein D (E4S1L1) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E4S1L1
- Elsewhere: RCSB PDB 6SHU · PDBe 6SHU · UniProt E4S1L1
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