MolNFT v1 · #163810 · protein
Salmonella ATPase invc with ATP gamma S
6SDX · ATP synthase: “Salmonella ATPase invc with ATP gamma S”. X-ray diffraction, 2 ligands (AGS, MG), 2 pockets (best druggability 0.52). MolNFT v1 #163810 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SDX
- Type
- protein
- Length
- 347 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP synthase
- UniProt
- A0A0D6IHD2
- Ligands
- AGS, MG
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP synthase | protein | 347 | 46% helix, 21% strand | A0A0D6IHD2 |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.52 | 0.84 | 19 | GOL |
| 2 | 68 | 0.33 | 0.76 | 16 | MG |
Compared structures
- 6SDX · Salmonella ATPase InvC with ATP gamma S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6IHD2
- Elsewhere: RCSB PDB 6SDX · PDBe 6SDX · UniProt A0A0D6IHD2
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