MolNFT v1 · #163762 · protein
Cryo-EM structure of barley yellow dwarf virus vlp
6SCL · Coat protein: “Cryo-EM structure of barley yellow dwarf virus vlp”. Electron microscopy, 2 pockets (best druggability 0.64). MolNFT v1 #163762 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SCL
- Type
- protein
- Length
- 426 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein
- UniProt
- O56812
- Pockets
- 2 · best druggability 0.64
Structure
electron microscopy · 2 distinct chains · 6% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Coat protein | protein | 140 | 6% helix, 48% strand | O56812 |
| C | Coat protein | protein | 146 | 5% helix, 47% strand | O56812 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 537 | 0.64 | 0.76 | 44 | empty |
| 2 | 75 | 0.45 | 0.81 | 16 | empty |
Interfaces
3 interfaces between chains.
- A–B · 473 Ų buried · 8 hydrogen bonds · protein-protein
- C–B · 472 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 434 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6SCL · Cryo-EM Structure of Barley Yellow Dwarf Virus VLP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O56812
- Elsewhere: RCSB PDB 6SCL · PDBe 6SCL · UniProt O56812
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.