MolNFT v1 · #163737 · protein
Ytra from sulfolobus acidocaldarius, a gntr-family transcription factor
6SBS · Regulatory protein: “Ytra from sulfolobus acidocaldarius, a gntr-family transcription factor”. X-ray diffraction, 5 pockets (best druggability 0.52). MolNFT v1 #163737 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SBS
- Type
- protein
- Length
- 210 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory protein
- UniProt
- Q4J7S4
- Pockets
- 5 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulatory protein | protein | 94 | 52% helix, 7% strand | Q4J7S4 |
| B | Regulatory protein | protein | 116 | 56% helix, 6% strand | Q4J7S4 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 176 | 0.52 | 0.78 | 28 | empty |
| 2 | 130 | 0.47 | 0.78 | 20 | empty |
| 3 | 88 | 0.36 | 0.75 | 10 | empty |
| 4 | 64 | 0.34 | 0.76 | 14 | empty |
| 5 | 50 | 0.32 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1787 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6SBS · YtrA from Sulfolobus acidocaldarius, a GntR-family transcription factor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4J7S4
- Elsewhere: RCSB PDB 6SBS · PDBe 6SBS · UniProt Q4J7S4
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