MolNFT v1 · #163725 · protein
Structure of type II terpene cyclase MSTE_R337A from scytonema in complex with geranylgeranyl dihydroxybenzoate (substrate)
6SBG: “Structure of type II terpene cyclase MSTE_R337A from scytonema in complex with geranylgeranyl…”. X-ray diffraction, 1 ligand (L4E), 4 pockets (best druggability 0.79). MolNFT v1 #163725 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6SBG
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mste
- UniProt
- A0A2D1CM82
- Ligands
- L4E
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mste | protein | 351 | 53% helix, 8% strand | A0A2D1CM82 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 268 | 0.79 | 0.90 | 33 | L4E |
| 2 | 132 | 0.41 | 0.75 | 26 | empty |
| 3 | 98 | 0.36 | 0.75 | 17 | empty |
| 4 | 83 | 0.35 | 0.76 | 19 | empty |
Compared structures
- 6SBG · Structure of type II terpene cyclase MstE_R337A from Scytonema in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2D1CM82
- Elsewhere: RCSB PDB 6SBG · PDBe 6SBG · UniProt A0A2D1CM82
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