MolNFT v1 · #163618 · protein + RNA
Cryo-EM structure of the type III-B cmr-beta complex bound to non- cognate target RNA
6S8E: “Cryo-EM structure of the type III-B cmr-beta complex bound to non- cognate target RNA”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #163618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S8E
- Type
- protein + RNA
- Length
- 7,593 residues
- Chains
- 35
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F0NDX5, F0NDX6, F0NDX1, F0NDX3, F0NDX4, F0NDX2, F0NDX7
- Ligands
- ZN
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 154 | — | F0NDX5 |
| D, E, F, G | — | protein | 285 | — | F0NDX6 |
| H | — | protein | 312 | — | F0NDX1 |
| I | — | protein | 284 | — | F0NDX3 |
| J | — | protein | 475 | — | F0NDX4 |
| K | — | protein | 1023 | — | F0NDX2 |
| U | — | rna | 44 | — | — |
| V | — | rna | 47 | — | — |
| X, x, T, W, t, w, L, M, O, P, l, m, o, p, N, n, Q, R, S, q, r, s | — | protein | 173 | — | F0NDX7 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S8E · Cryo-EM structure of the type III-B Cmr-beta complex bound to non-cognate target RNA · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0NDX5
- Every structure of UniProt F0NDX6
- Every structure of UniProt F0NDX1
- Every structure of UniProt F0NDX3
- Every structure of UniProt F0NDX4
- Every structure of UniProt F0NDX2
- Every structure of UniProt F0NDX7
- Elsewhere: RCSB PDB 6S8E · PDBe 6S8E · UniProt F0NDX5 · UniProt F0NDX6 · UniProt F0NDX1 · UniProt F0NDX3 · UniProt F0NDX4 · UniProt F0NDX2 · UniProt F0NDX7
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