MolNFT v1 · #163608 · protein
Tsabde complex from thermotoga maritima
6S84: “Tsabde complex from thermotoga maritima”. X-ray diffraction, 2 ligands (APC, MG). MolNFT v1 #163608 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S84
- Type
- protein
- Length
- 1,342 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9WXZ2, R4NRX5, Q9WZX7
- Ligands
- APC, MG
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 306 | — | Q9WXZ2 |
| E | — | protein | 162 | — | R4NRX5 |
| D | — | protein | 308 | — | Q9WXZ2 |
| C | — | protein | 205 | — | Q9WZX7 |
| F | — | protein | 201 | — | Q9WZX7 |
| B | — | protein | 160 | — | R4NRX5 |
Ligands and binding sites
- APC · Diphosphomethylphosphonic acid adenosyl ester · ligand · 4 copies · chains A, B, E, D
- MG · Magnesium ion · metal · 2 copies · chains E, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S84 · TsaBDE complex from Thermotoga maritima · the same entry in another collection · chain F against F, TM-score 1.00
- Q9WZX7 · AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine biosynthesis… · a predicted model of the same protein · chain F against A, TM-score 0.96
- Q9WXZ2 · AlphaFold monomer V2.0 prediction for tRNA N6-adenosine threonylcarbamoyltransferase… · a predicted model of the same protein · chain D against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WXZ2
- Every structure of UniProt R4NRX5
- Every structure of UniProt Q9WZX7
- Elsewhere: RCSB PDB 6S84 · PDBe 6S84 · UniProt Q9WXZ2 · UniProt R4NRX5 · UniProt Q9WZX7
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