MolNFT v1 · #163536 · protein
Structure of rib R28N from streptococcus pyogenes
6S5Z · Surface protein R28: “Structure of rib R28N from streptococcus pyogenes”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #163536 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S5Z
- Type
- protein
- Length
- 161 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Surface protein R28
- UniProt
- Q9XDB6
- Ligands
- NA
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Surface protein R28 | protein | 82 | 13% helix, 38% strand | Q9XDB6 |
| B | Surface protein R28 | protein | 79 | 14% helix, 39% strand | Q9XDB6 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 399 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6S5Z · Structure of Rib R28N from Streptococcus pyogenes · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9XDB6
- Elsewhere: RCSB PDB 6S5Z · PDBe 6S5Z · UniProt Q9XDB6
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