MolNFT v1 · #163426 · protein
Structure of the nb-arc domain from the tomato immune receptor NRC1
6S2P: “Structure of the nb-arc domain from the tomato immune receptor NRC1”. X-ray diffraction, 1 ligand (ADP), 4 pockets (best druggability 0.72). MolNFT v1 #163426 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6S2P
- Type
- protein
- Length
- 252 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NRC1
- UniProt
- A1X877
- Ligands
- ADP
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | NRC1 | protein | 252 | 39% helix, 12% strand | A1X877 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 501 | 0.72 | 0.81 | 44 | ADP |
| 2 | 240 | 0.64 | 0.81 | 32 | empty |
| 3 | 203 | 0.49 | 0.75 | 18 | empty |
| 4 | 144 | 0.45 | 0.76 | 26 | empty |
Compared structures
- 6S2P · Structure of the NB-ARC domain from the Tomato immune receptor NRC1 · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1X877
- Elsewhere: RCSB PDB 6S2P · PDBe 6S2P · UniProt A1X877
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