MolNFT v1 · #163316 · protein

Crystal structure of E. COLI adenylate kinase R119A mutant

6RZE: “Crystal structure of E. COLI adenylate kinase R119A mutant”. X-ray diffraction, 2 ligands (NA, CL), 1 pocket (best druggability 0.56). MolNFT v1 #163316 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6RZE
Type: protein
Length: 214 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adenylate kinase
EC: 2.7.4.3
UniProt: A0A234NPI7
Ligands: NA, CL
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adenylate kinase (EC 2.7.4.3)	protein	214	50% helix, 17% strand	A0A234NPI7

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.56	0.90	14	empty

Compared structures

6RZE · Crystal structure of E. coli Adenylate kinase R119A mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A234NPI7
Elsewhere: RCSB PDB 6RZE · PDBe 6RZE · UniProt A0A234NPI7

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