MolNFT v1 · #163299 · protein
Copper oxidase from colletotrichum graminicola
6RYW · Kelch domain-containing protein: “Copper oxidase from colletotrichum graminicola”. X-ray diffraction, 1 ligand (CU), 4 pockets (best druggability 0.64). MolNFT v1 #163299 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RYW
- Type
- protein
- Length
- 623 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kelch domain-containing protein
- EC
- 1.1.3.7
- UniProt
- E3Q9X3
- Ligands
- CU
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Kelch domain-containing protein (EC 1.1.3.7) | protein | 623 | 5% helix, 41% strand | E3Q9X3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 442 | 0.64 | 0.77 | 48 | empty |
| 2 | 132 | 0.45 | 0.77 | 32 | empty |
| 3 | 88 | 0.37 | 0.76 | 17 | empty |
| 4 | 50 | 0.25 | 0.73 | 20 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 6RYW · Copper oxidase from Colletotrichum graminicola · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E3Q9X3
- Elsewhere: RCSB PDB 6RYW · PDBe 6RYW · UniProt E3Q9X3
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