MolNFT v1 · #163266 · protein

The structure of rubredoxin from desulfovibrio desulfuricans

6RXN: “The structure of rubredoxin from desulfovibrio desulfuricans”. X-ray diffraction, 2 ligands (FOR, FE). MolNFT v1 #163266 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6RXN
Type: protein
Length: 45 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rubredoxin
UniProt: P04170
Ligands: FOR, FE

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rubredoxin	protein	45	22% helix, 22% strand	P04170

Ligands and binding sites

FOR · Formyl group · ligand · chains A
FE · Fe (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

6RXN · The structure of rubredoxin from desulfovibrio desulfuricans · the same entry in another collection · chain A against A, TM-score 1.00
P04170 · AlphaFold monomer V2.0 prediction for rubredoxin-1 (P04170) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04170
Elsewhere: RCSB PDB 6RXN · PDBe 6RXN · UniProt P04170

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