MolNFT v1 · #16325 · protein
Orthorhombic crystal form of molybdopterin synthase
1NVI · Molybdopterin converting factor subunit 1: “Orthorhombic crystal form of molybdopterin synthase”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.46). MolNFT v1 #16325 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1NVI
- Type
- protein
- Length
- 223 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molybdopterin converting factor subunit 1; Molybdopterin converting factor subunit 2
- UniProt
- P30748, P30749
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Molybdopterin converting factor subunit 1 | protein | 81 | 28% helix, 27% strand | P30748 |
| E | Molybdopterin converting factor subunit 2 | protein | 142 | 36% helix, 33% strand | P30749 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.46 | 0.75 | 34 | SO4 |
Interfaces
1 interface between chains.
- D–E · 946 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 1NVI · Orthorhombic Crystal Form of Molybdopterin Synthase · the same entry in another collection · chain D against D, TM-score 1.00
- P30749 · AlphaFold monomer V2.0 prediction for molybdopterin synthase catalytic subunit (P30749) · a predicted model of the same protein · chain E against A, TM-score 0.97
- P30748 · AlphaFold monomer V2.0 prediction for molybdopterin synthase sulfur carrier subunit… · a predicted model of the same protein · chain D against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30748
- Every structure of UniProt P30749
- Elsewhere: RCSB PDB 1NVI · PDBe 1NVI · UniProt P30748 · UniProt P30749
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