MolNFT v1 · #163184 · protein

X-ray structure of the levansucrase from erwinia tasmaniensis in complex with levanbiose

6RV5 · Levansucrase (beta-D-fructofuranosyl transferase): “X-ray structure of the levansucrase from erwinia tasmaniensis in complex with levanbiose”. X-ray diffraction, 2 ligands (FRU, ZN), 2 pockets (best druggability 0.54). MolNFT v1…

PDB: 6RV5
Type: protein
Length: 412 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Levansucrase (beta-D-fructofuranosyl transferase)
EC: 2.4.1.10
UniProt: B2VCC3
Ligands: FRU, ZN
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Levansucrase (beta-D-fructofuranosyl transferase) (EC 2.4.1.10)	protein	412	8% helix, 47% strand	B2VCC3

Ligands and binding sites

FRU · beta-D-fructofuranose · sugar · 2 copies · chains A
ZN · Zinc ion · metal · 2 copies · chains A
GOL · Glycerol · additive · 11 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	243	0.54	0.77	35	GOL
2	72	0.28	0.72	15	empty

Compared structures

6RV5 · X-ray structure of the levansucrase from Erwinia tasmaniensis in complex with levanbiose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2VCC3
Elsewhere: RCSB PDB 6RV5 · PDBe 6RV5 · UniProt B2VCC3

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