MolNFT v1 · #163130 · protein

Bacteriophage SPP1 procapsid-II protein

6RTL · Major capsid protein: “Bacteriophage SPP1 procapsid-II protein”. Electron microscopy, 20 pockets (best druggability 0.78). MolNFT v1 #163130 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6RTL
Type: protein
Length: 2,261 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major capsid protein
UniProt: Q38582
Pockets: 20 · best druggability 0.78

Structure

electron microscopy · 1 distinct chain · 20% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G	Major capsid protein	protein	323	20% helix, 18% strand	Q38582

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	141	0.78	0.95	34	empty
2	87	0.74	0.96	30	empty
3	107	0.74	0.94	36	empty
4	86	0.72	0.95	25	empty
5	73	0.70	0.95	24	empty

Interfaces

13 interfaces between chains.

E–F · 2032 Å² buried · 15 hydrogen bonds · protein-protein
D–E · 1960 Å² buried · 10 hydrogen bonds · protein-protein
A–B · 1950 Å² buried · 11 hydrogen bonds · protein-protein
C–D · 1936 Å² buried · 9 hydrogen bonds · protein-protein
B–C · 1917 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6RTL · Bacteriophage SPP1 procapsid-II protein · the same entry in another collection · chain G against G, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q38582
Elsewhere: RCSB PDB 6RTL · PDBe 6RTL · UniProt Q38582

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.