MolNFT v1 · #163129 · protein

Cryoem structure of modified turnip yellows virus devoid of minor capsid protein readthrough domain

6RTK · Major capsid protein: “Cryoem structure of modified turnip yellows virus devoid of minor capsid protein readthrough domain”. Electron microscopy, 1 pocket (best druggability 0.59). MolNFT v1 #163129 on GenesisL1: 3D structure…

PDB: 6RTK
Type: protein
Length: 419 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major capsid protein
UniProt: P09508
Pockets: 1 · best druggability 0.59

Structure

electron microscopy · 2 distinct chains · 9% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Major capsid protein	protein	139	9% helix, 52% strand	P09508
C	Major capsid protein	protein	141	10% helix, 46% strand	P09508

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	446	0.59	0.75	42	empty

Interfaces

3 interfaces between chains.

A–B · 489 Å² buried · 8 hydrogen bonds · protein-protein
B–C · 473 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 462 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

6RTK · CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09508
Elsewhere: RCSB PDB 6RTK · PDBe 6RTK · UniProt P09508

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