MolNFT v1 · #163060 · protein
Crystal structure of LDTMT2 from mycobacterium tuberculosis bound to ebselen
6RRM: “Crystal structure of LDTMT2 from mycobacterium tuberculosis bound to ebselen”. X-ray diffraction, 2 ligands (9JT, NH4). MolNFT v1 #163060 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RRM
- Type
- protein
- Length
- 702 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O53223
- Ligands
- 9JT, NH4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 351 | — | O53223 |
Ligands and binding sites
- 9JT · ~{N}-phenyl-2-selanyl-benzamide · ligand · 2 copies · chains A, B
- NH4 · Ammonium ion · ion · 3 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RRM · Crystal structure of LdtMt2 from Mycobacterium tuberculosis bound to Ebselen · the same entry in another collection · chain B against B, TM-score 1.00
- O53223 · AlphaFold monomer V2.0 prediction for L,D-transpeptidase 2 (O53223) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O53223
- Elsewhere: RCSB PDB 6RRM · PDBe 6RRM · UniProt O53223
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